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The Role of Mass Spectrometry and Proteogenomics in the Advancement of HLA Epitope Prediction

Published: 23 February 2018

Author(s): Amanda L. Creech, Ying S. Ting, Scott P. Goulding, John F.K. Sauld, Dominik Barthelme, Michael S. Rooney, Terri A. Addona, Jennifer G. Abelin

Abstract A challenge in developing personalized cancer immunotherapies is the prediction of putative cancer‐specific antigens. Currently, predictive algorithms are used to infer binding of peptides to human leukocyte antigen (HLA) heterodimers to aid in the selection of putative epitope targets. One drawback of current epitope prediction algorithms is that they are trained on datasets containing biochemical HLA‐peptide binding data...

thumbnail image: PROTEOMICS


Specific T Cell Responses against Minor Histocompatibility Antigens Cannot Generally Be Explained by Absence of Their Allelic Counterparts on the Cell Surface

Published: 23 February 2018

Author(s): Helena M. Bijen, Chopie Hassan, Michel G. D. Kester, George M. C. Janssen, Pleun Hombrink, Arnoud H. Ru, Jan Wouter Drijfhout, Hugo D. Meiring, Ad P. Jong, J. H. Frederik Falkenburg, Connie R. Jimenez, Mirjam H. M. Heemskerk, Peter A. Veelen

Abstract Allogeneic stem cell transplantation has emerged as immunotherapy in the treatment of a variety of hematological malignancies. Its efficacy depends on induction of graft versus leukemia by donor lymphocytes. Both graft versus leukemia and graft versus host disease are induced by T cells reactive against polymorphic peptides, called minor histocompatibility antigens (MiHA), which differ between patient and donor and are...

thumbnail image: PROTEOMICS


Insights from Proteomic Studies into Plant Somatic Embryogenesis

Published: 23 February 2018

Author(s): Angelo Schuabb Heringer, Claudete Santa‐Catarina, Vanildo Silveira

Abstract Somatic embryogenesis is a biotechnological approach mainly used for the clonal propagation of different plants worldwide. In somatic embryogenesis, embryos arise from somatic cells under appropriate culture conditions. This plasticity in plants is a demonstration of true cellular totipotency and is the best approach among the genetic transformation protocols used for plant regeneration. Despite the importance of somatic...

thumbnail image: PROTEOMICS


Capacitive coupling synchronizes autonomous microfluidic oscillators

Published: 23 February 2018

Author(s): Sasha Cai Lesher‐Pérez, Chao Zhang, Shuichi Takayama

Abstract Even identically designed autonomous microfluidic oscillators have device‐to‐device oscillation variability that arises due to inconsistencies in fabrication, materials, and operation conditions. This work demonstrates, experimentally and theoretically, that with appropriate capacitive coupling these microfluidic oscillators can be synchronized. The size and characteristics of the capacitive coupling needed and the range of...

thumbnail image: ELECTROPHORESIS

Angewandte Chemie

Nickel(0)‐Catalyzed Hydroalkenylation of Imines with Styrene and Its Derivatives

Published: 23 February 2018

Author(s): Li‐Jun Xiao, Chao‐Yue Zhao, Lei Cheng, Bo‐Ya Feng, Wei‐Min Feng, Jian‐Hua Xie, Xiu‐Fang Xu, Qi‐Lin Zhou

Abstract A nickel(0)‐catalyzed hydroalkenylation of imines with styrene and its derivatives is described. A wide range of aromatic and aliphatic imines directly coupled with styrene and its derivatives, thus providing various synthetically useful allylic amines with up to 95 % yield. The reaction offers a new atom‐ and step‐economical approach to allylic amines by using alkenes instead of alkenyl‐metallic reagents. Experiments and...

thumbnail image: Angewandte Chemie

Angewandte Chemie

Kinetische Analyse und strukturelle Interpretation der kompetitiven Ligandenbindung für Denitrifikation in gekürztem Hämoglobin N

Published: 23 February 2018

Author(s): Akshaya Kumar Das, Markus Meuwly

Abstract Die Umwandlung von Stickstoffmonoxid (NO) zu Nitrat (NO3−) durch Dioxygenierung schützt Zellen vor tödlichem NO. Ausgehend von NO‐gebundendem Häm ist der erste Schritt in der Umwandlung von NO zu harmlosem NO3− die Ligandenaustauschreaktion FeNO+O2→FeO2+NO, die auf molekularer Ebene nach wie vor schlecht verstanden ist. Die berechnete Barriere für die Austauschreaktion zwischen dem Wildtyp (WT) und der Y33A‐Mutante unterscheidet sich...

thumbnail image: Angewandte Chemie

Angewandte Chemie

Utilization of a Fluorescent Dye Molecule as a Proton and Electron Reservoir

Published: 23 February 2018

Author(s): Ian A. Kieffer, Robert J. Allen, Jordan L. Fernandez, Jackson L. Deobald, Brena L. Thompson, Jacob D. Wimpenny, Zachariah M. Heiden

Abstract Fluorescent dyes have been widely utilized as chemical sensors and in photodynamic therapy, but exploitation of their redox‐active nature in chemical reactions has remained mostly unexplored. This report describes the isolation of a 4,4‐difluoro‐4‐bora‐3a,4a‐diaza‐s‐indacene (BODIPY)‐based radical. The redox‐active nature of the BODIPY compound can be utilized in combination with a guanidine center, the basicity of which...

thumbnail image: Angewandte Chemie

Angewandte Chemie

Epoxides as Alkylating Reagents for the Catellani Reaction

Published: 23 February 2018

Author(s): Hong‐Gang Cheng, Chenggui Wu, Han Chen, Ruiming Chen, Guangyin Qian, Zhi Geng, Qiang Wei, Yuanyuan Xia, Jingyang Zhang, Yuming Zhang, Qianghui Zhou

thumbnail image: Angewandte Chemie

Chemistry - A European Journal

Effects of C‐Related Dangling Bonds and Functional Groups on the Fluorescent and Electrochemiluminescent Properties of Carbon‐Based Dots

Published: 23 February 2018

Author(s): Min Wang, Ruifen Sun, Qian Wang, Lichan Chen, Linxi Hou, Yuwu Chi, Chun Hua Lu, Fengfu Fu, Yongqiang Dong

Abstract Single‐layer carbon‐based dots (SCDs) were chosen as a model to investigate the effect of the C‐related dangling bonds with spin S=1/2 and functional groups on the electrochemiluminescent (ECL) and fluorescent (FL) properties of CDs. The C‐related dangling bonds and functional groups of SCDs were tuned by chemical reduction with NaBH4. There have several main findings via investigating the ECL and FL properties of SCDs before and after...

thumbnail image: Chemistry - A European Journal

Chemistry - A European Journal

Aggregation‐Induced Emission (AIE) in Ag−Au Bimetallic Nanocluster

Published: 23 February 2018

Author(s): Shan Jin, Wei Liu, Daqiao Hu, Xuejuan Zou, Xi Kang, Wenjun Du, Shuang Chen, Shiqiang Wei, Shuxin Wang, Manzhou Zhu

Abstract Herein we report the synthesis and structure determination of a non‐fluorescent Au4Ag5(dppm)2(SAdm)6(BPh4) (dppm=bis(diphenylphosphino)methane and HSAdm=1‐adamantane mercaptan) nanocluster in methanol with extremely strong AIE when aggregating to the solid state (i.e., film or crystal). This phenomenon was rarely reported in structural determined noble metal nanoclusters. The extended X‐ray absorption fine structure (EXAFS) measurement...

thumbnail image: Chemistry - A European Journal

Most-accessed articles from each ChemPubSoc Europe, ACES, and GDCh journal

January 2018


New Academicians and Foreign Members of the Chinese Academy of Sciences [News]
Angew. Chem. Int. Ed. 2018, vol. 57, p. 1445

Michael Dirkmann, Javier Iglesias-Fernández, Victor Muñoz, Pandian Sokkar, Christoph Rumancev, Andreas von Gundlach, Oktavian Krenczyk, Tobias Vöpel, Julia Nowack, Martin A. Schroer, Simon Ebbinghaus, Christian Herrmann, Axel Rosenhahn, Elsa Sanchez-Garcia, Frank Schulz
A Multiperspective Approach to Solvent Regulation of Enzymatic Activity: HMG-CoA Reductase [Communication]
ChemBioChem 2018, vol. 19, p. 153

Isabela C. Man, Hai-Yan Su, Federico Calle-Vallejo, Heine A. Hansen, José I. Martínez, Nilay G. Inoglu, John Kitchin, Thomas F. Jaramillo, Jens K. Nørskov, Jan Rossmeisl
Universality in Oxygen Evolution Electrocatalysis on Oxide Surfaces [Full Paper]
ChemCatChem 2011, vol. 3, p. 1159

Matthias Ducci
Geheimtinten [Artikel]
Chem. Unserer Zeit 2017, vol. 51, p. 228

Balaram Mukhopadhyay, Rituparna Das
Chemical O-Glycosylations: An Overview [Review]
ChemistryOpen 2016, vol. 5, p. 401

Lei Han, Meng-Ke Wu, Fei-Yan Yi, Dongxiao Chen, Hai-Long Jiang
Chemical Sensors Based on Metal-Organic Frameworks [Review]
ChemPlusChem 2016, vol. 81, p. 675

Miaofang Chi, Harry M. Meyer, Zili Wu, Liangbo Liang, Peter V. Bonnesen, Dale K. Hensley, Rui Peng, Yang Song, Cheng Ma, Bobby G. Sumpter, Adam J. Rondinone
High-Selectivity Electrochemical Conversion of CO2 to Ethanol using a Copper Nanoparticle/N-Doped Graphene Electrode [Full Paper]
ChemistrySelect 2016, vol. 1, p. 6055

Ekkehard Schwab, Sebastian Schiebahn, Georg Schaub, Martin Reuter, Konstantin Räuchle, Ludolf Plass, Marcell Peuckert, Anja Metzelthin, Falko Mahlendorf, Wolfram Koch, Renate Hoer, Angelika Heinzel, Sigmar Bräuninger, Martin Bertau, Christian Beilmann, Florian Ausfelder, Ferdi Schüth, Detlef Stolten, Gisa Teßmer, Kurt Wagemann, Karl-Friedrich Ziegahn
Energiespeicherung als Element einer sicheren Energieversorgung [Übersichtsbeitrag]
Chem. Ing. Tech. 2015, vol. 87, p. 17

Abas Mohsenzadeh, Akram Zamani, Mohammad J. Taherzadeh
Bioethylene Production from Ethanol: A Review and Techno-economical Evaluation [Review]
ChemBioEng Rev. 2017, vol. 4, p. 75

Lantao Liu, Yanli Zhou, Shuang Liu, Maotian Xu
The Applications of Metal−Organic Frameworks in Electrochemical Sensors [Review]
ChemElectroChem 2018, vol. 5, p. 6

Yinghui Xue, Qin Zhang, Tao Zhang, Lei Fu
Black Phosphorus: Properties, Synthesis, and Applications in Energy Conversion and Storage [Focus Review]
ChemNanoMat 2017, vol. 3, p. 352

Haymo Ross
We are Family (Chemistry Smash Hits) [Editorial]
Chem. Eur. J. 2018, vol. 24, p. 6

Xinzhe Shi, Arpan Sasmal, Jean-François Soulé, Henri Doucet
Metal-Catalyzed C−H Bond Activation of 5-Membered Carbocyclic Rings: A Powerful Access to Azulene, Acenaphthylene and Fulvene Derivatives [Focus Review]
Chem. Asian J. 2018, vol. 13, p. 143

Andrea Gualandi, Luca Mengozzi, Pier Giorgio Cozzi
Iron-Promoted Radical Reactions: Current Status and Perspectives [Focus Review]
Asian J. Org. Chem. 2017, vol. 6, p. 1160

Truong-Thanh Tung, Trong T. Dao, Marta G. Junyent, Michael Palmgren, Thomas Günther-Pomorski, Anja T. Fuglsang, Søren B. Christensen, John Nielsen
Cover Feature: LEGO-Inspired Drug Design: Unveiling a Class of Benzo[d]thiazoles Containing a 3,4-Dihydroxyphenyl Moiety as Plasma Membrane H+-ATPase Inhibitors (ChemMedChem 1/2018) [Cover Picture]
ChemMedChem 2018, vol. 13, p. 2

Zhoufeng Bian, Sonali Das, Ming Hui Wai, Plaifa Hongmanorom, Sibudjing Kawi
A Review on Bimetallic Nickel-Based Catalysts for CO2 Reforming of Methane [Review]
ChemPhysChem 2017, vol. 18, p. 3117

Dogukan Hazar Apaydin, Dong Ryeol Whang
Artificial Photosynthesis: Learning from Nature [Review]
ChemPhotoChem 10.1002/cptc.201700163

Jiwhan Kim, Hee-Eun Kim, Hyunjoo Lee
Single-Atom Catalysts of Precious Metals for Electrochemical Reactions [Minireview]
ChemSusChem 2018, vol. 11, p. 104

Ross J. Marshall, Ross S. Forgan
Postsynthetic Modification of Zirconium Metal-Organic Frameworks [Microreview]
Eur. J. Inorg. Chem. 2016, p. 4310

Davin Tan, Tomislav Friščić
Mechanochemistry for Organic Chemists: An Update [Microreview]
Eur. J. Org. Chem. 2018, p. 18

Deutscher Lebensmittelchemikertag 2016 in Freising-Weihenstephan [Vorträge]
Lebensmittelchemie 2017, vol. 71, p. 2

Meilensteine der Chemie 2018 [Bildung & Gesellschaft]
Nachr. Chem. 2018, vol. 66, p. 38

Katrin Sommer, Christina Toschka, Laura Schröder, Thomas Philipp Schröder, Henning Steff, Roland A. Fischer
Modellexperimente im Chemieunterricht. [Artikel]
CHEMKON 2017, vol. 24, p. 13

Catharina Goedecke
Why Does Iodine Turn Starch Blue?
ChemViews Magazine 2016

Most cited articles from each ChemPubSoc Europe, ACES, and GDCh journal



Shoujun Zhu, Qingnan Meng, Lei Wang, Junhu Zhang, Yubin Song, Han Jin, Kai Zhang, Hongchen Sun, Haiyu Wang, Bai Yang
Highly Photoluminescent Carbon Dots for Multicolor Patterning, Sensors, and Bioimaging
Angew. Chem. Int. Ed. 2013, vol. 52, pp. 3953–3957

Balayeshwanth R. Vummidi, Jawad Alzeer, Nathan W. Luedtke
Fluorescent Probes for G-Quadruplex Structures [Review]
ChemBioChem 2013, vol. 14, pp. 540–558

Zhi-Yuan Gu, Jihye Park, Aaron Raiff, Zhangwen Wei, Hong-Cai Zhou
Metal–Organic Frameworks as Biomimetic Catalysts [Minireview]
ChemCatChem 2014, vol. 6, pp. 67–75

Anthony J. Arduengo, Roland Krafczyk
Auf der Suche nach Stabilen Carbenen [Organische Chemie]
Chem. Unserer Zeit 1998, vol. 32, pp. 6–14

Marc Steinmetz, Stefan Grimme
Benchmark Study of the Performance of Density Functional Theory for Bond Activations with (Ni,Pd)-Based Transition-Metal Catalysts [Full Paper]
ChemistryOpen 2013, vol. 2, pp. 115–124

Philipp Scharf, Jens Müller
Nucleic Acids With Metal-Mediated Base Pairs and Their Applications [Review]
ChemPlusChem 2013, vol. 78, pp. 20–34

Philipp Kaiser, Rajabhau Bajirao Unde, Christoph Kern, Andreas Jess
Production of Liquid Hydrocarbons with CO2 as Carbon Source based on Reverse Water-Gas Shift and Fischer-Tropsch Synthesis [Research Article]
Chem. Ing. Tech. 2013, vol. 85, pp. 489–499

Xiaosi Zhou, Yu-Guo Guo
Highly Disordered Carbon as a Superior Anode Material for Room-Temperature Sodium-Ion Batteries [Communication]
ChemElectroChem 2014, vol. 1, pp. 83–86

Chuanxi Wang, Zhenzhu Xu, Chi Zhang
Polyethyleneimine-Functionalized Fluorescent Carbon Dots: Water Stability, pH Sensing, and Cellular Imaging [Full Paper]
ChemNanoMat 2015, vol. 1, pp. 122–127

Konggang Qu, Jiasi Wang, Jinsong Ren, Xiaogang Qu
Carbon Dots Prepared by Hydrothermal Treatment of Dopamine as an Effective Fluorescent Sensing Platform for the Label-Free Detection of Iron(III) Ions and Dopamine [Full Paper]
Chem. Eur. J. 2013, vol. 19, pp. 7243–7249

Yinuo Wu, Jun Wang, Fei Mao, Fuk Yee Kwong
Palladium-Catalyzed Cross-Dehydrogenative Functionalization of C(sp2)–H Bonds [Focus Review]
Chem. Asian J. 2014, vol. 9, pp. 26–47

Naohiko Yoshikai, Ye Wei
Synthesis of Pyrroles, Indoles, and Carbazoles through Transition-Metal-Catalyzed C–H Functionalization [Review]
Asian J. Org. Chem. 2013, vol. 2, pp. 466–478

Lluís Ballell, Robert H. Bates, Rob J. Young, Daniel Alvarez-Gomez, Emilio Alvarez-Ruiz, Vanessa Barroso, Delia Blanco, Benigno Crespo, Jaime Escribano, Rubén González, Sonia Lozano, Sophie Huss, Angel Santos-Villarejo, José Julio Martín-Plaza, Alfonso Mendoza, María José Rebollo-Lopez, Modesto Remuiñan-Blanco, José Luis Lavandera, Esther Pérez-Herran, Francisco Javier Gamo-Benito, José Francisco García-Bustos, David Barros, Julia P. Castro, Nicholas Cammack
Fueling Open-Source Drug Discovery: 177 Small-Molecule Leads against Tuberculosis [Full Paper]
ChemMedChem 2013, vol. 8, pp. 313–321

Peter Politzer, Jane S. Murray
Halogen Bonding: An Interim Discussion [Review]
ChemPhysChem 2013, vol. 14, pp. 278–294

Volker Hessel, Dana Kralisch, Norbert Kockmann, Timothy Noël, Qi Wang
Novel Process Windows for Enabling, Accelerating, and Uplifting Flow Chemistry [Review]
ChemSusChem 2013, vol. 6, pp. 746–789

Helena J. Shepherd, Gábor Molnár, William Nicolazzi, Lionel Salmon, Azzedine Bousseksou
Spin Crossover at the Nanometre Scale [Microreview]
Eur. J. Inorg. Chem. 2013, pp. 653–661

Junichiro Yamaguchi, Kei Muto, Kenichiro Itami
Recent Progress in Nickel-Catalyzed Biaryl Coupling [Microreview]
Eur. J. Org. Chem. 2013, pp. 19–30

David Schweinfurth, Naina Deibel, Fritz Weisser, Biprajit Sarkar
Mit Klick zu neuen Liganden [Magazin]
Nachr. Chem. 2011, vol. 59, pp. 937–941
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