Detecting Single Nucleotide Polymorphisms

Detecting Single Nucleotide Polymorphisms

Author: European Journal of Inorganic Chemistry

Hydrogen bonds stabilize base pairs in DNA. Metal ions that are introduced into the DNA duplex stabilize base pairs by coordination. They replace the weaker hydrogen bonds by stronger metal–base bonds, forming so-called “metal-mediated base pairs”.

Biswarup Jash and Jens Müller, University of Münster, Germany, have prepared the phenanthroline-derived nucleobase surrogate, 1H-imidazo[4,5-f][1,10]phenanthroline) (P in the picture). This molecule can discriminate the pyrimidine nucleobases cytosine (C) and thymine (T). In the presence of AgI ions, P–C pairs are stabilized by P–AgI–C bonds, whereas P–T pairs are strongly destabilized. This site-specific metal binding can be used to differentiate between nucleobases at certain positions in a DNA strand. To detect the difference between C and T, the researchers developed a molecular beacon that responds to the formation of a stabilized P–AgI–C pair by strong fluorescence.

 

Base pairs

 

By using this system, it was possible to detect medically relevant single molecule polymorphisms. They lead to DNA variants with different bases at a certain position. These small changes have been shown to signalize differing risks of developing cancer. This information could help design individualized drugs or plan protection against several diseases.


 

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