Chemistry Databases

  • Author: ChemistryViews.org
  • Published Date: 01 November 2016
  • Copyright: Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim
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The search for scientific information usually starts with free internet search engines. Google Scholar, for example, searches through the scientific literature. Wikipedia, probably the most extensive encyclopedia, provides quick information and a good start into a new topic.

However, an ordinary search engine only detects a small part of the contents of the Internet. A complete literature review, therefore, requires additional search methods and skills.

The catchphrase "big data" is fairly new, although the concept is not. Collections of large and growing sets of chemical data have existed for years. What is new, however, is how much "bigger" that data is and how fast it is growing, and also how complicated the information is. Therefore, tools are needed to collect and analyze the data. And collecting and analyzing data is becoming increasingly valuable to improve processes and performance.


So, altogether good reasons to make yourself familiar with databases. Below, you can find a collection of some useful resources.

 

  • BIOSIS Previews
    Combines journal content from Biological Abstracts with non-journal coverage from reports, reviews, and meetings.
    Provided by Thomas Reuters
  • Cambridge Structural Database (CSD)
    Repository for small-molecule organic and metal-organic crystal structures; contains the results of over half-a-million x-ray and neutron diffraction analyses.
    Provided by The Cambridge Crystallographic Data Centre (CCDC), UK
  • ChEMBL
    Open data resource of binding, functional, and ADMET bioactivity data.
    Provided by the European Bioinformatic Institute (EMBL-EBI), UK
  • Chemical Entities of Biological Interest (ChEBI)
    Focuses on small chemical compounds.
    Provided by the European Bioinformatic Institute (EMBL-EBI), UK, as part of the Open Biomedical Ontologies (OBO Foundry) effort
  • Chemicalize.org
    Identifies chemical structures on webpages and other text; some features free of charge.
    Provided by ChemAxon, Hungary
  • ChemInform RxnFinder
    Search engine for the ChemInform Reaction Library (CIRX), which contains over 2 million reactions and covers data from 1990 to the present from ca. 100 journals; a tool for the synthetic organic chemist.
    Provided by Wiley
  • TOXNET
    Group of databases covering chemicals and drugs, diseases and the environment, environmental health, occupational safety and health, poisoning, risk assessment and regulations, and toxicology.
    Provided by Toxicology and Environmental Health Information Program (TEHIP), USA
  • ChemPlanner
    Helps chemists design viable synthetic routes to their target molecules by predicting synthetic strategies and exposing a wide spectrum of relevant synthetic methods and available building blocks.
    Provided by Wiley
  • ChemSpider
    Chemical structure database; access to over 43 million structures, properties, and associated information.
    Provided by the Royal Society of Chemistry (RSC)
  • ChemSub Online
    Privately organized database; information on chemical substances.
    Provided by Robert Charles Knight and Aniruddha Warakoutikha
  • ChemSynthesis
    Chemicals with synthesis references and physical properties.
    Provided by the ChemSynthesis team
  • Computer Aided Material Preselection by Uniform Standards (CAMPUS)
    Datasheets for resins from participating material producers; only database that offers comparable material information, restricted to uniform standards.
    Provided by Chemie Wirtschaftsförderungs-GmbH, Germany
  • CrystalWorks
    Wide range of crystallographic structure data made available by the Chemical Database Service.
    Provided by the Science and Technology Facilities Council, UK
  • Derwent World Patent Index (DWPISM)
    Patent information.
    Provided by Thomson Reuters
  • DETHERM
    Thermophysical data for pure substances and mixtures .
    Provided by DECHEMA e.V., Germany
  • Dmoz – NMR spectra Database
    NMR spectra.
    Provided by a global community of volunteer editors
  • DrugBank
    Bioinformatics and cheminformatics resource that combines detailed drug data with comprehensive drug target information.
    Provided by the Canadian Institutes of Health Research, Alberta Innovates – Health Solutions, and by the Metabolomics Innovation Centre (TMIC)
  • eMolecules
    Supplier information of chemicals.
    Provided by eMolecules, Inc.
  • Electronic Encyclopedia of Reagents for Organic Synthesis (eROS)
    Information on reagents and catalysts for all chemists planning or working on organic syntheses.
    Provided by Wiley
  • Eurochem
    Comprehensive directory and search engine for chemical and related industries.
    Provided by EuroChem Group AG, Switzerland
  • GoogleScholar
    Broadly search for scholarly literature.
    Provided by Google
  • hmdb – The Human Metabolome Database
    Detailed information about small molecule metabolites found in the human body.
    Provided by The Metabolic Innovation Centre (TMIC), Canada
  • Inorganic Crystal Structure Database (ICSD)
    Completely identified inorganic crystal structures; contains about 177,000 peer-reviewed data entries.
    Provided by FIZ Karlsruhe – Leibniz-Institut für Informationsinfrastruktur GmbH, Germany
  • International Patent Documentation Center Database (INPADOC)
    International patent collection; contains patent families and legal status information; updated weekly.
    Provided by the European Patent Office (EPO)
  • IUPAC Standards Online
    Database of IUPAC’s standards and recommendations, extracted from the journal Pure and Applied Chemistry (PAC).
    Provided by Walter de Gruyter GmbH
  • KEGG: Kyoto Encyclopedia of Genes and Genomes
    Database resource for understanding high-level functions and utilities of biological systems from molecular-level information, especially large-scale molecular datasets generated by genome sequencing and other high-throughput experimental technologies.
    Provided by Kanehisa Laboratories
  • Merck Index
    Encyclopedia of chemicals, drugs, and biologicals with over 10,000 monographs on single substances or groups of related compounds; includes an appendix with monographs on organic named reactions.
    Provided by the Royal Society of Chemistry (RSC)
  • MMsINC Search
    Lists commercially available substances for virtual screening and chemoinformatic utilization.
    Provided by the University of Padova, Italy
  • NIST Chemistry WebBook
    Chemical and physical property data on over 40,000 compounds.
    Provided by National Institute of Standards and Technology (NIST), USA
  • NMRShiftDB
    Nuclear magnetic resonance (NMR) spectra of organic structures; allows for spectrum prediction (13C, 1H, and other nuclei) and for searching spectra, structures, and other properties.
    Provided by the NMRShiftDB project
  • eChemPortal
    Physical chemical properties and information on ecotoxicity, environmental fate and behavior, and toxicity.
    Provided by the Organisation for Economic Co-operation and Development (OECD)
  • OpenFoodTox
    access to summaries of toxicological information used by the European Food Safety Authority (EFSA) in its risk assessment; toxicity of chemicals found in the food and feed chain; updated on a yearly basis.
    Provided by EFSA
  • OrgSyn
    Detailed procedures for the synthesis of organic compounds.
    Provided by Organic Syntheses, Inc.
  • PubChem
    Information on the biological activities of small molecules.
    Provided by the National Center for Biotechnology Information (NBI), USA.
  • PubMed
    More than 24 million citations for biomedical literature from MEDLINE, life science journals, and online books; citations may include links to full-text content from PubMed Central and publisher web sites.
    Provided by The National Center for Biotechnology Information (NBI), US NAtional Library of Medicine, and National Institute of Health (NIH), USA
  • Reaxys
    Data and citations from the Beilstein and Gmelin databases; includes chemical patents.
    Provided by Elsevier
  • Science of Synthesis
    Critical review of synthetic methodology developed from the early 1800s to today in the fields of organic and organometallic chemistry.
    Provided by Thieme
  • SciFinder
    Research discovery application that provides access to a comprehensive and authoritative source of references, substances, and reactions in chemistry and related sciences.
    Provided by Chemical Abstracts Service (CAS)
  • Scopus
    Abstract and citation database of peer-reviewed literature: scientific journals, books, and conference proceedings;  features tools to track, analyze, and visualize research.
    Provided by Elsevier
  • Spectra Lab
    Spectral data system that uses empirical spectral data (2.2 million MS, NMR, and IR spectra) and advanced software to help chemists, toxicologists, and life scientists identify chemical substances.
    Provided by Wiley
  • Spectral Database for Organic Compounds (SDBS)
    Integrated spectral database system for organic compounds; includes six different types of spectra (EI-MS, 1H-NMR, 13C-NMR, FT-IR, Raman, ESR) for ca. 34.600 compounds.
    Provided by National Institute of Advanced Industrial Science and Technology (AIST), Japan
  • Springer Materials
    Numerical and graphical data on more than 3000 physical and chemical properties of over 250,000 materials and chemical systems.
    Provided by Springer
  • Web of Science
    Connects publications and researchers through citations and controlled indexing in curated databases spanning all scientific disciplines.
    Provided by Clarivate Analytics
  • World Wide Protein Data Bank (wwPDB)
    Information about the 3D structures of proteins, nucleic acids, and complex assemblies.
    Provided by Worldwide Protein Data Bank Foundation
  • ZINC
    Collection of commercially-available chemical compounds prepared especially for virtual screening; contains over 35 million compounds in ready-to-dock 3D formats.
    Provided by the Irwin and Shoichet Laboratories at the University of California, San Francisco, USA

 

If you would like to see databases added to the list, please let us know at ChemistryViews@wiley-vch.de.


See also:

 


Article Information

DOI: 10.1002/chemv.201600097

 

Article Views: 3732

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